A B C D E F G H I K L M N O P Q R S T U V W

T

target - Variable in class edu.claflin.finder.logic.cygrouper.CygrouperEdge

terminalLogs - Variable in class edu.claflin.finder.log.LogUtil

The HashMap used for determining which of the logging outputs are logged to the terminal.

testFile(File) - Static method in class edu.claflin.finder.io.graph.SIFGraphIO

Tests to see if a File is a valid graph file.

testFile(File) - Static method in class edu.claflin.finder.io.graph.SimpleGraphIO

Tests to see if a File is a valid graph file.

toNumber(Object) - Method in class edu.claflin.finder.logic.comp.EdgeWeightComparator

Converts an unknown object into a BigDecimal if possible.

toString() - Method in enum edu.claflin.finder.algo.ArgumentsBundle.COMMON_ARGS

toString() - Method in class edu.claflin.finder.algo.ArgumentsBundle

toString() - Method in enum edu.claflin.finder.log.LogLevel

toString() - Method in enum edu.claflin.finder.log.LogType

Used to get a user friendly version of the LogType.

toString() - Method in class edu.claflin.finder.logic.cygrouper.CygrouperEdge

toString() - Method in class edu.claflin.finder.logic.cygrouper.CygrouperNode

toString() - Method in class edu.claflin.finder.logic.Edge

toString() - Method in class edu.claflin.finder.logic.Node

transferEdgesContainingNodeFromGraph(Graph, Node) - Method in class edu.claflin.finder.logic.Graph

Adds all edges containing the input node from the input graph to this graph, provided that the other vertex is already within this graph.

transpose(int, int) - Method in class edu.claflin.finder.logic.Graph

Transposes the specified nodes.

transpose(String, String) - Method in class edu.claflin.finder.logic.Graph

Deprecated.

Outdated since v3. Replaced by {}

transpose(Node, Node) - Method in class edu.claflin.finder.logic.Graph

Transposes the specified nodes.

tree - Variable in class edu.claflin.finder.logic.cygrouper.CytogrouperMain

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